PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0779.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 365aa    MW: 39820.6 Da    PI: 7.7221
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0779.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.14.4e-34193250259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  Kaladp0008s0779.1.p 193 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSFQDPSVVITTYEGQHNHP 250
                          8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-35177252IPR003657WRKY domain
SuperFamilySSF1182908.89E-30184252IPR003657WRKY domain
PROSITE profilePS5081132.73187252IPR003657WRKY domain
SMARTSM007747.0E-40192251IPR003657WRKY domain
PfamPF031061.1E-26193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSDHQSTDFF NLFHDPFVTY QYNNLLGQAG TAPTSAGSSL YDNSSYNSGI TGMSFSESLD  60
GSVDYNALAR AFGLSSSEDL LLSAVNEGLS YGKVQRDQMV QGVGDDGQRG GRGRSTGGGD  120
QFANSSISSS SGEASGGEED CSKKENKVAK GSHAGEDGDG SKKQNKQNNK KGEKKQREPR  180
FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT QKCSVKKRVE RSFQDPSVVI  240
TTYEGQHNHP IPTTLRGSYN ASGLMFSSTS SLSPASFNLV GGGGQGAGFT NPHDVFLRMP  300
HQYDNNTLIH GSTIMEYNNG VPPSLTLMQL QQRRHQRPFQ SDYGLLQDMV NPSASFGDHK  360
LEQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29183252877Probable WRKY transcription factor 4
2lex_A3e-29183252877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445471.12e-76PREDICTED: probable WRKY transcription factor 71
SwissprotQ93WV42e-57WRK71_ARATH; Probable WRKY transcription factor 71
TrEMBLA0A0D2S1Y12e-76A0A0D2S1Y1_G
STRINGVIT_10s0003g02810.t011e-68(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-55WRKY DNA-binding protein 71